gatb.core-API-1.4.2
BranchingNode_t< Node > Struct Template Reference

Specific Node structure representing a branching node in the De Bruijn graph. More...

#include <Graph.hpp>

Inheritance diagram for BranchingNode_t< Node >:
Inheritance graph

Additional Inherited Members

- Public Types inherited from Node_t< Value_t >
typedef Value_t Value
 
- Public Member Functions inherited from Node_t< Value_t >
 Node_t ()
 
 Node_t (const Node_t::Value &kmer, kmer::Strand strand=kmer::STRAND_FORWARD, u_int16_t abundance=0, u_int64_t mphfIndex=0)
 
bool operator== (const Node_t &other) const
 
bool operator!= (const Node_t &other) const
 
bool operator< (const Node_t &other) const
 
void set (const Node_t::Value &kmer, const kmer::Strand &strand)
 
- Public Attributes inherited from Node_t< Value_t >
Node_t::Value kmer
 
kmer::Strand strand
 
u_int16_t abundance
 

Detailed Description

template<typename Node>
struct gatb::core::debruijn::impl::BranchingNode_t< Node >

Specific Node structure representing a branching node in the De Bruijn graph.

The BranchingNode inherits from the Node structure.

Its semantics is to define nodes this way: indegree!=1 || outdegree!=1

Note: with such a definition, nodes that are tips (ie indegree==0 || outdegree=0) are considered as branching. This could be refined if needed (defined this way for historical matters).

Its main usage is to be the template specialization type for some Graph class methods.


The documentation for this struct was generated from the following file: