gatb.core-API-0.0.0
gatb::core::kmer::impl Namespace Reference

Implementation for genomic databases management. More...

Classes

class  BankKmers
 Bank whose sequences are all the possible kmers of a kmer model. More...
 
struct  BankStats
 Statistics about banks. More...
 
class  BloomBuilder
 Helper that builds a Bloom filter from an iterator of kmers. More...
 
class  CounterBuilder
 Class that counts the number of occurrences of a kmer in several banks. More...
 
class  CountProcessorAbstract
 
class  CountProcessorChain
 
class  CountProcessorCustomProxy
 
class  CountProcessorCutoff
 
class  CountProcessorDump
 
class  CountProcessorHistogram
 
class  CountProcessorSolidityAbstract
 
class  DebloomAlgorithm
 Construction of the set of critical false positives nodes. More...
 
struct  Kmer
 Entry point for kmer management. More...
 
class  MPHFAlgorithm
 Algorithm that builds a hash table whose keys are kmers and values are kmer abundances. More...
 
class  PartiInfo
 
class  Repartitor
 
class  SortingCountAlgorithm
 Class performing the kmer counting (also known as 'DSK') More...
 

Detailed Description

Implementation for genomic databases management.