gatb.core-API-1.3.0
gatb::core Namespace Reference

Core package of the GATP project. More...

Namespaces

 bank
 Package for genomic databases management.
 
 debruijn
 Package for De Bruijn graph management.
 
 kmer
 Package for genomic databases management.
 
 system
 Operating System abstraction layer.
 
 tools
 Tools package.
 

Detailed Description

Core package of the GATP project.

The gatb::core package holds all the fundamental packages needed for writting assembly algorithms.

It holds some generic tools, like operating system abstraction, collections management or design patterns concerns. It also holds recurrent needs as reading genomic banks, handling kmers and so on.

The gatb::core package holds all the fundamental packages needed for writing assembly algorithms.

It holds some generic tools, like operating system abstraction, collections management or design patterns concerns. It also holds recurrent needs as reading genomic banks, handling kmers and so on.