gatb.core-API-0.0.0
impl Directory Reference
Directory dependency graph for impl:
/builds/workspace/publish-doc-api/gatb-core/src/gatb/kmer/impl

Files

file  BankKmerIterator.hpp
 Kmer iterator on sequences of a bank.
 
file  BankKmers.hpp
 Kmer iterator on sequences of a bank.
 
file  BloomAlgorithm.hpp
 Bloom algorithm, ie. compute a Bloom filter from a set of reads.
 
file  BloomBuilder.hpp
 Build bloom filter from an iterator of kmers.
 
file  DebloomAlgorithm.hpp
 Debloom algorithm, ie. compute false positive sets for a Bloom filter.
 
file  DebloomAlgorithmFactory.hpp
 Factory for Debloom algorithms.
 
file  DebloomMinimizerAlgorithm.hpp
 Debloom algorithm, ie. compute false positive sets for a Bloom filter.
 
file  LinearCounter.hpp
 Linear counter for kmers using a bloom.
 
file  Model.hpp
 Kmer management.
 
file  RepartitionAlgorithm.hpp
 Repartition algorithm, ie. compute statistics on kmers.
 
file  Sequence2SuperKmer.hpp
 
file  SortingCountAlgorithm.hpp
 Counting kmers from a set of sequences.