gatb.core-API-1.4.2
BankKmers Member List

This is the complete list of members for BankKmers, including all inherited members.

AbstractBank()AbstractBankinline
BankKmers(size_t kmerSize)BankKmersinline
estimate(u_int64_t &number, u_int64_t &totalSize, u_int64_t &maxSize)BankKmersinlinevirtual
estimateNbItems()AbstractBankinlinevirtual
estimateNbItemsBanki(int i)AbstractBankinlinevirtual
estimateSequencesSize()AbstractBankinlinevirtual
finalize()AbstractBankinlinevirtual
flush()BankKmersinlinevirtual
gatb::forget()=0ISmartPointerpure virtual
gatb::core::system::SmartPointer::forget()SmartPointerinlinevirtual
getBanks() const AbstractBankinlinevirtual
getCompositionNb()AbstractBankinlinevirtual
getEstimateThreshold()AbstractBankinlinevirtual
getId()BankKmersinlinevirtual
getIdNb(int i)AbstractBankinlinevirtual
getItems(Sequence *&buffer)Iterable< Sequence >inlinevirtual
getItems(Sequence *&buffer, size_t start, size_t nb)Iterable< Sequence >inlinevirtual
getNbItems()BankKmersinlinevirtual
getSize()BankKmersinlinevirtual
insert(const bank::Sequence &item)BankKmersinlinevirtual
Bag< Sequence >::insert(const Sequence &item)=0Bag< Sequence >pure virtual
Bag< Sequence >::insert(const std::vector< Sequence > &items, size_t length=0)Bag< Sequence >inlinevirtual
Bag< Sequence >::insert(const Sequence *items, size_t length)Bag< Sequence >inlinevirtual
iterate(Functor f)Iterable< Sequence >inline
iterator()BankKmersinlinevirtual
remove()AbstractBankinlinevirtual
setEstimateThreshold(u_int64_t nbSeq)AbstractBankinlinevirtual
SmartPointer()SmartPointerinlineprotected
gatb::use()=0ISmartPointerpure virtual
gatb::core::system::SmartPointer::use()SmartPointerinlinevirtual
~ISmartPointer()ISmartPointerinlinevirtual
~SmartPointer()SmartPointerinlineprotectedvirtual