gatb.core-API-0.0.0
Class Index
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  A  
CountProcessorCutoff (gatb::core::kmer::impl)   HistogramNull (gatb::core::tools::misc::impl)   LocalSynchronizer (gatb::core::system)   
  S  
CountProcessorDump (gatb::core::kmer::impl)   HostInfo (gatb::core::tools::misc::impl)   ListIterator (gatb::core::tools::dp::impl)   
AbstractBank (gatb::core::bank::impl)   CountProcessorHistogram (gatb::core::kmer::impl)   
  I  
LargeIntDummy (gatb::core::tools::math)   Sequence (gatb::core::bank)   
AdaptatorDefault (gatb::core::tools::collections::impl)   CountProcessorSolidityAbstract (gatb::core::kmer::impl)   LibraryInfo (gatb::core::tools::misc::impl)   SimpleNode (gatb::core::debruijn::impl)   
AbstractSubjectIterator (gatb::core::tools::dp::impl)   Kmer::Count (gatb::core::kmer::impl)   IBank (gatb::core::bank)   LocalTimeInfo (gatb::core::tools::misc::impl)   SimplePathsTraversalTemplate (gatb::core::debruijn::impl)   
Abundance (gatb::core::tools::misc)   CommonFile (gatb::core::system::impl)   IBankFactory (gatb::core::bank)   
  M  
SortingCountAlgorithm (gatb::core::kmer::impl)   
ArrayData (gatb::core::tools::misc)   CpuInfoCommon (gatb::core::system::impl)   BankBinary::Iterator (gatb::core::bank::impl)   System (gatb::core::system::impl)   
Algorithm (gatb::core::tools::misc::impl)   ISystemInfo::CpuInfo (gatb::core::system)   BankFasta::Iterator (gatb::core::bank::impl)   MonumentTraversalTemplate (gatb::core::debruijn::impl)   SystemInfoCommon (gatb::core::system::impl)   
ArgData (gatb::core::tools::misc::impl)   Collection (gatb::core::tools::collections)   IContainerNode (gatb::core::debruijn)   MPHFTerminatorTemplate (gatb::core::debruijn::impl)   SystemInfoLinux (gatb::core::system::impl)   
  B  
Container (gatb::core::tools::collections)   IterativeExtensions (gatb::core::debruijn::impl)   Kmer::ModelAbstract (gatb::core::kmer::impl)   SystemInfoMacos (gatb::core::system::impl)   
CollectionAbstract (gatb::core::tools::collections::impl)   ICountProcessor (gatb::core::kmer)   Kmer::ModelCanonical (gatb::core::kmer::impl)   SystemInfoWindows (gatb::core::system::impl)   
Bank (gatb::core::bank::impl)   CollectionCache (gatb::core::tools::collections::impl)   IFile (gatb::core::system)   Kmer::ModelDirect (gatb::core::kmer::impl)   SmartPointer (gatb::core::system)   
BankAlbum (gatb::core::bank::impl)   CollectionCacheSorted (gatb::core::tools::collections::impl)   IFileSystem (gatb::core::system)   Kmer::ModelMinimizer (gatb::core::kmer::impl)   SerialDispatcher (gatb::core::tools::dp::impl)   
BankBinary (gatb::core::bank::impl)   ContainerSet (gatb::core::tools::collections::impl)   IMemory (gatb::core::system)   MPHFAlgorithm (gatb::core::kmer::impl)   STLIterator (gatb::core::tools::dp::impl)   
BankComposite (gatb::core::bank::impl)   CancellableIterator (gatb::core::tools::dp::impl)   IMemoryAllocator (gatb::core::system)   MemoryAllocatorStdlib (gatb::core::system::impl)   Subject (gatb::core::tools::dp::impl)   
BankConverterAlgorithm (gatb::core::bank::impl)   CompositeIterator (gatb::core::tools::dp::impl)   IMemoryComponent (gatb::core::system)   MemoryBounded (gatb::core::system::impl)   SubjectIterator (gatb::core::tools::dp::impl)   
BankDelegate (gatb::core::bank::impl)   CompoundIterator (gatb::core::tools::dp::impl)   IMemoryOperations (gatb::core::system)   MemoryCommon (gatb::core::system::impl)   Stringify (gatb::core::tools::misc::impl)   
BankFasta (gatb::core::bank::impl)   Data::ConvertASCII (gatb::core::tools::misc)   ISmartPointer (gatb::core::system)   MemoryOperationsCommon (gatb::core::system::impl)   StringLine (gatb::core::tools::misc::impl)   
BankFiltered (gatb::core::bank::impl)   Cell (gatb::core::tools::storage::impl)   ISynchronizer (gatb::core::system)   MemorySizeStore (gatb::core::system::impl)   Storage (gatb::core::tools::storage::impl)   
BankHelper (gatb::core::bank::impl)   CollectionFile (gatb::core::tools::storage::impl)   ISystemInfo (gatb::core::system)   MapMPHF (gatb::core::tools::collections::impl)   StorageFactory (gatb::core::tools::storage::impl)   
BankRandom (gatb::core::bank::impl)   CollectionHDF5 (gatb::core::tools::storage::impl)   IThread (gatb::core::system)   
  N  
StorageFileFactory (gatb::core::tools::storage::impl)   
BankSplitter (gatb::core::bank::impl)   CollectionNode (gatb::core::tools::storage::impl)   IThreadFactory (gatb::core::system)   StorageHDF5Factory (gatb::core::tools::storage::impl)   
BankStrings (gatb::core::bank::impl)   
  D  
IThreadGroup (gatb::core::system)   Node_t (gatb::core::debruijn::impl)   StorageTools (gatb::core::tools::storage::impl)   
BranchingAlgorithm (gatb::core::debruijn::impl)   ITime (gatb::core::system)   NullTerminatorTemplate (gatb::core::debruijn::impl)   
  T  
BranchingEdge_t (gatb::core::debruijn::impl)   DebloomAlgorithm (gatb::core::kmer::impl)   IBloom (gatb::core::tools::collections::impl)   NullTraversalTemplate (gatb::core::debruijn::impl)   
BranchingNode_t (gatb::core::debruijn::impl)   Dispatcher (gatb::core::tools::dp::impl)   IterableAdaptor (gatb::core::tools::collections::impl)   NullIterator (gatb::core::tools::dp::impl)   TerminatorTemplate (gatb::core::debruijn::impl)   
BranchingTerminatorTemplate (gatb::core::debruijn::impl)   Data (gatb::core::tools::misc)   IterableFile (gatb::core::tools::collections::impl)   
  O  
TraversalTemplate (gatb::core::debruijn::impl)   
BankKmers (gatb::core::kmer::impl)   
  E  
IterableHelpers (gatb::core::tools::collections::impl)   ThreadFactoryLinux (gatb::core::system::impl)   
BankStats (gatb::core::kmer::impl)   IteratorFile (gatb::core::tools::collections::impl)   OAHash (gatb::core::tools::collections::impl)   ThreadFactoryMacos (gatb::core::system::impl)   
BloomBuilder (gatb::core::kmer::impl)   Edge_t (gatb::core::debruijn::impl)   Iterable (gatb::core::tools::collections)   Option (gatb::core::tools::misc::impl)   ThreadGroup (gatb::core::system::impl)   
Bag (gatb::core::tools::collections)   Exception (gatb::core::system)   ICommand (gatb::core::tools::dp)   OptionFailure (gatb::core::tools::misc::impl)   ThreadObject (gatb::core::system::impl)   
BagCache (gatb::core::tools::collections::impl)   ExceptionComposite (gatb::core::system)   IDispatcher (gatb::core::tools::dp)   OptionNoParam (gatb::core::tools::misc::impl)   TimeAbstract (gatb::core::system::impl)   
BagCacheSorted (gatb::core::tools::collections::impl)   ExceptionErrno (gatb::core::system)   IteratorAdaptor (gatb::core::tools::dp::impl)   OptionOneParam (gatb::core::tools::misc::impl)   TimeCycle (gatb::core::system::impl)   
BagCacheSortedBuffered (gatb::core::tools::collections::impl)   ExceptionNotImplemented (gatb::core::system)   IObserver (gatb::core::tools::dp)   OptionsHelpVisitor (gatb::core::tools::misc::impl)   TimeSystem (gatb::core::system::impl)   
BagFile (gatb::core::tools::collections::impl)   EventInfo (gatb::core::tools::dp)   ISubject (gatb::core::tools::dp)   OptionsParser (gatb::core::tools::misc::impl)   TruncateIterator (gatb::core::tools::dp::impl)   
Bloom (gatb::core::tools::collections::impl)   
  F  
Iterator (gatb::core::tools::dp)   
  P  
TimeInfo (gatb::core::tools::misc::impl)   
BloomCacheCoherent (gatb::core::tools::collections::impl)   IteratorListener (gatb::core::tools::dp)   TokenizerIterator (gatb::core::tools::misc::impl)   
BloomContainer (gatb::core::tools::collections::impl)   FunctorSetVariant (gatb::core::debruijn::impl)   IntegerTemplate (gatb::core::tools::math)   Path_t (gatb::core::debruijn::impl)   Tool (gatb::core::tools::misc::impl)   
BloomExtendedNeighborCoherent (gatb::core::tools::collections::impl)   FileSystemCommon (gatb::core::system::impl)   IHistogram (gatb::core::tools::misc)   PartiInfo (gatb::core::kmer::impl)   
  U  
BloomFactory (gatb::core::tools::collections::impl)   FileSystemLinux (gatb::core::system::impl)   IOptionsParser (gatb::core::tools::misc)   ProgressIterator (gatb::core::tools::collections::impl)   
BloomNeighborCoherent (gatb::core::tools::collections::impl)   FileSystemMacos (gatb::core::system::impl)   IOptionsParserVisitor (gatb::core::tools::misc)   PairedIterator (gatb::core::tools::dp::impl)   UnitigsConstructionAlgorithm (gatb::core::debruijn::impl)   
BloomNull (gatb::core::tools::collections::impl)   FilterIterator (gatb::core::tools::dp::impl)   IProperties (gatb::core::tools::misc)   ProductIterator (gatb::core::tools::dp::impl)   
  V  
BloomSynchronized (gatb::core::tools::collections::impl)   
  G  
IPropertiesVisitor (gatb::core::tools::misc)   Progress (gatb::core::tools::misc::impl)   
BooPHF (gatb::core::tools::collections::impl)   IProperty (gatb::core::tools::misc)   ProgressNone (gatb::core::tools::misc::impl)   VisibilityOptionsVisitor (gatb::core::tools::misc::impl)   
BagHDF5 (gatb::core::tools::storage::impl)   GraphTemplate (gatb::core::debruijn::impl)   ICell (gatb::core::tools::storage)   ProgressTimer (gatb::core::tools::misc::impl)   Vector (gatb::core::tools::misc)   
  C  
GraphUnitigsTemplate (gatb::core::debruijn::impl)   
  K  
ProgressTimerAndSystem (gatb::core::tools::misc::impl)   
  X  
Group (gatb::core::tools::storage::impl)   Properties (gatb::core::tools::misc::impl)   
ContainerNode (gatb::core::debruijn::impl)   
  H  
Kmer (gatb::core::kmer::impl)   Partition (gatb::core::tools::storage::impl)   XmlDumpPropertiesVisitor (gatb::core::tools::misc::impl)   
ContainerNodeCascading (gatb::core::debruijn::impl)   Kmer::KmerCanonical (gatb::core::kmer::impl)   PartitionCache (gatb::core::tools::storage::impl)   XmlReader (gatb::core::tools::misc::impl)   
ContainerNodeNoCFP (gatb::core::debruijn::impl)   Hash16 (gatb::core::tools::collections::impl)   Kmer::KmerDirect (gatb::core::kmer::impl)   
  R  
  d  
CounterBuilder (gatb::core::kmer::impl)   HashFunctors (gatb::core::tools::collections::impl)   Kmer::KmerMinimizer (gatb::core::kmer::impl)   
CountProcessorAbstract (gatb::core::kmer::impl)   HierarchyParserVisitor (gatb::core::tools::misc::impl)   
  L  
Repartitor (gatb::core::kmer::impl)   dag_vector (dag)   
CountProcessorChain (gatb::core::kmer::impl)   Histogram (gatb::core::tools::misc::impl)   RawDumpPropertiesVisitor (gatb::core::tools::misc::impl)   
  i  
CountProcessorCustomProxy (gatb::core::kmer::impl)   HistogramCache (gatb::core::tools::misc::impl)   LocalObject (gatb::core::system)   IOptionsParser::Result (gatb::core::tools::misc)   
Storage::istream (gatb::core::tools::storage::impl)   
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