gatb.core-API-1.4.2
SortingCountAlgorithm.hpp File Reference

Counting kmers from a set of sequences. More...

#include <gatb/tools/misc/impl/Algorithm.hpp>
#include <gatb/bank/api/IBank.hpp>
#include <gatb/kmer/api/ICountProcessor.hpp>
#include <gatb/kmer/impl/Model.hpp>
#include <gatb/kmer/impl/BankKmers.hpp>
#include <gatb/kmer/impl/Configuration.hpp>
#include <gatb/kmer/impl/PartiInfo.hpp>
#include <gatb/tools/storage/impl/Storage.hpp>
#include <string>
Include dependency graph for SortingCountAlgorithm.hpp:

Classes

class  SortingCountAlgorithm< span >
 Class performing the kmer counting (also known as 'DSK') More...
 

Namespaces

 gatb::core
 Core package of the GATP project.
 
 gatb::core::kmer
 Package for genomic databases management.
 
 gatb::core::kmer::impl
 Implementation for genomic databases management.
 

Detailed Description

Counting kmers from a set of sequences.

Date
01/03/2013
Author
edrezen